frontal cortex rna seq data Search Results


rneasy kit  (Qiagen)
99
Qiagen rneasy kit
Rneasy Kit, supplied by Qiagen, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/frontal+cortex+rna+seq+data/pmc06022692-248-11-10?v=Qiagen
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rneasy kit - by Bioz Stars, 2026-08
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frontal cortex rna seq data  (Human Protein Atlas)
86
Human Protein Atlas frontal cortex rna seq data
Frontal Cortex Rna Seq Data, supplied by Human Protein Atlas, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/frontal+cortex+rna+seq+data/pm42128883-99-4-11?v=Human+Protein+Atlas
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mouse brain cortex ffpe 10x genomics  (10X Genomics)
86
10X Genomics mouse brain cortex ffpe 10x genomics
Figure 2. De-spot identified similar cell-type-specific domains in multiple mouse brain slices (A) Free frozen tissue (slice 1) and <t>FFPE</t> tissue (slice 2). Annotations of anatomic mouse brain structure are from the Allen Brain Atlas. (B) Previously published single-cell profiles, including seven annotated cell types: astrocytes-ependymal, endothelial-mural, interneurons, microglia, oligo- dendrocytes, pyramidal CA1, and pyramidal SS. (C) 3D Landscapes of slice 1 and slice 2 generated by Giotto. The color of each domain corresponds to the cell types with the same color in (B). (D) 3D Landscapes of slice 1 and slice 2 generated by Seurat. (E) 3D Landscapes of slice 1 and slice 2 generated by CARD.
Mouse Brain Cortex Ffpe 10x Genomics, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/frontal+cortex+rna+seq+data/pm39127046-664-35-39?v=10X+Genomics
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mouse brain cortex ffpe 10x genomics - by Bioz Stars, 2026-08
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rneasy mini kits  (Qiagen)
99
Qiagen rneasy mini kits
Figure 2. De-spot identified similar cell-type-specific domains in multiple mouse brain slices (A) Free frozen tissue (slice 1) and <t>FFPE</t> tissue (slice 2). Annotations of anatomic mouse brain structure are from the Allen Brain Atlas. (B) Previously published single-cell profiles, including seven annotated cell types: astrocytes-ependymal, endothelial-mural, interneurons, microglia, oligo- dendrocytes, pyramidal CA1, and pyramidal SS. (C) 3D Landscapes of slice 1 and slice 2 generated by Giotto. The color of each domain corresponds to the cell types with the same color in (B). (D) 3D Landscapes of slice 1 and slice 2 generated by Seurat. (E) 3D Landscapes of slice 1 and slice 2 generated by CARD.
Rneasy Mini Kits, supplied by Qiagen, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/frontal+cortex+rna+seq+data/pmc06345941-220-14-13?v=Qiagen
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rneasy mini kits - by Bioz Stars, 2026-08
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frontal cortex rna sequencing libraries  (Illumina Inc)
99
Illumina Inc frontal cortex rna sequencing libraries
Figure 2. De-spot identified similar cell-type-specific domains in multiple mouse brain slices (A) Free frozen tissue (slice 1) and <t>FFPE</t> tissue (slice 2). Annotations of anatomic mouse brain structure are from the Allen Brain Atlas. (B) Previously published single-cell profiles, including seven annotated cell types: astrocytes-ependymal, endothelial-mural, interneurons, microglia, oligo- dendrocytes, pyramidal CA1, and pyramidal SS. (C) 3D Landscapes of slice 1 and slice 2 generated by Giotto. The color of each domain corresponds to the cell types with the same color in (B). (D) 3D Landscapes of slice 1 and slice 2 generated by Seurat. (E) 3D Landscapes of slice 1 and slice 2 generated by CARD.
Frontal Cortex Rna Sequencing Libraries, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/frontal+cortex+rna+seq+data/ppr0168328-60-0-8?v=Illumina+Inc
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frontal cortex rna sequencing libraries - by Bioz Stars, 2026-08
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tia1 mutation carriers  (Proteintech)
94
Proteintech tia1 mutation carriers
Figure 2. De-spot identified similar cell-type-specific domains in multiple mouse brain slices (A) Free frozen tissue (slice 1) and <t>FFPE</t> tissue (slice 2). Annotations of anatomic mouse brain structure are from the Allen Brain Atlas. (B) Previously published single-cell profiles, including seven annotated cell types: astrocytes-ependymal, endothelial-mural, interneurons, microglia, oligo- dendrocytes, pyramidal CA1, and pyramidal SS. (C) 3D Landscapes of slice 1 and slice 2 generated by Giotto. The color of each domain corresponds to the cell types with the same color in (B). (D) 3D Landscapes of slice 1 and slice 2 generated by Seurat. (E) 3D Landscapes of slice 1 and slice 2 generated by CARD.
Tia1 Mutation Carriers, supplied by Proteintech, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/frontal+cortex+rna+seq+data/pmc05576574-746-13-46?v=Proteintech
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tia1 mutation carriers - by Bioz Stars, 2026-08
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mouse cortex single-cell rna-sequencing dataset (smart-seq)  (Allen Institute for Brain Science)
90
Allen Institute for Brain Science mouse cortex single-cell rna-sequencing dataset (smart-seq)
Figure 2. De-spot identified similar cell-type-specific domains in multiple mouse brain slices (A) Free frozen tissue (slice 1) and <t>FFPE</t> tissue (slice 2). Annotations of anatomic mouse brain structure are from the Allen Brain Atlas. (B) Previously published single-cell profiles, including seven annotated cell types: astrocytes-ependymal, endothelial-mural, interneurons, microglia, oligo- dendrocytes, pyramidal CA1, and pyramidal SS. (C) 3D Landscapes of slice 1 and slice 2 generated by Giotto. The color of each domain corresponds to the cell types with the same color in (B). (D) 3D Landscapes of slice 1 and slice 2 generated by Seurat. (E) 3D Landscapes of slice 1 and slice 2 generated by CARD.
Mouse Cortex Single Cell Rna Sequencing Dataset (Smart Seq), supplied by Allen Institute for Brain Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/frontal+cortex+rna+seq+data/pmc10279578-25-2-30?v=Allen+Institute+for+Brain+Science
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fus  (Proteintech)
94
Proteintech fus
(A) Electron micrographs of recombinant tau(287–391), α-synuclein, and Aβ 42 fibrils used as heterologous amyloid controls. <t>(B)</t> <t>TAF15</t> biosensor FRET readout shows no induction by heterologous amyloids (tau, α-synuclein, Aβ 42 ) relative to TAF15 seeds, confirming molecular specificity. Statistics: Two-way ANOVA with t-tests for multiple comparison (n=4 individual replicates). Dotted line indicates control averages (untreated cells). (C-D) aFTLD-U brain lysates (n=4 individual replicates) seed the TAF15 biosensor in a concentration-dependent manner, demonstrating prion-like propagation of ex vivo TAF15 aggregates. Dotted line indicates control averages (untreated cells). (E) TEM validation of recombinant <t>FUS</t> fibrils displaying canonical amyloid morphology. (F) FRET quantification in the TAF15 biosensor demonstrating absence of cross-seeding by FUS aggregates (n=4 individual replicates). (G) Confocal micrographs of biosensor cells co-expressing mRuby-tagged FUS and seeded with TAF15 aggregates, showing co-localization of FUS within TAF15 inclusions.
Fus, supplied by Proteintech, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/frontal+cortex+rna+seq+data/bio_rxiv__2025__11__17__688886-221-27-32?v=Proteintech
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scrna-seq data - mouse whole cortex and hippocampus smart-seq (2019) with 10x-smart-seq taxonomy (2020)  (Allen Institute for Brain Science)
90
Allen Institute for Brain Science scrna-seq data - mouse whole cortex and hippocampus smart-seq (2019) with 10x-smart-seq taxonomy (2020)

Scrna Seq Data Mouse Whole Cortex And Hippocampus Smart Seq (2019) With 10x Smart Seq Taxonomy (2020), supplied by Allen Institute for Brain Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/frontal+cortex+rna+seq+data/pmc08792262-15-0-16?v=Allen+Institute+for+Brain+Science
Average 90 stars, based on 1 article reviews
scrna-seq data - mouse whole cortex and hippocampus smart-seq (2019) with 10x-smart-seq taxonomy (2020) - by Bioz Stars, 2026-08
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single cell rna purification kit  (Norgen Biotek)
97
Norgen Biotek single cell rna purification kit

Single Cell Rna Purification Kit, supplied by Norgen Biotek, used in various techniques. Bioz Stars score: 97/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/frontal+cortex+rna+seq+data/bio_rxiv__2025__04__28__651094-221-22-26?v=Norgen+Biotek
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single cell rna purification kit - by Bioz Stars, 2026-08
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normal human brain rna (frontal lobe; pool 5 donors  (BioChain Institute)
90
BioChain Institute normal human brain rna (frontal lobe; pool 5 donors

Normal Human Brain Rna (Frontal Lobe; Pool 5 Donors, supplied by BioChain Institute, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/frontal+cortex+rna+seq+data/bio_rxiv__2025__01__28__635292-108-0-13?v=BioChain+Institute
Average 90 stars, based on 1 article reviews
normal human brain rna (frontal lobe; pool 5 donors - by Bioz Stars, 2026-08
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Image Search Results


Figure 2. De-spot identified similar cell-type-specific domains in multiple mouse brain slices (A) Free frozen tissue (slice 1) and FFPE tissue (slice 2). Annotations of anatomic mouse brain structure are from the Allen Brain Atlas. (B) Previously published single-cell profiles, including seven annotated cell types: astrocytes-ependymal, endothelial-mural, interneurons, microglia, oligo- dendrocytes, pyramidal CA1, and pyramidal SS. (C) 3D Landscapes of slice 1 and slice 2 generated by Giotto. The color of each domain corresponds to the cell types with the same color in (B). (D) 3D Landscapes of slice 1 and slice 2 generated by Seurat. (E) 3D Landscapes of slice 1 and slice 2 generated by CARD.

Journal: Cell reports methods

Article Title: Precise detection of cell-type-specific domains in spatial transcriptomics.

doi: 10.1016/j.crmeth.2024.100841

Figure Lengend Snippet: Figure 2. De-spot identified similar cell-type-specific domains in multiple mouse brain slices (A) Free frozen tissue (slice 1) and FFPE tissue (slice 2). Annotations of anatomic mouse brain structure are from the Allen Brain Atlas. (B) Previously published single-cell profiles, including seven annotated cell types: astrocytes-ependymal, endothelial-mural, interneurons, microglia, oligo- dendrocytes, pyramidal CA1, and pyramidal SS. (C) 3D Landscapes of slice 1 and slice 2 generated by Giotto. The color of each domain corresponds to the cell types with the same color in (B). (D) 3D Landscapes of slice 1 and slice 2 generated by Seurat. (E) 3D Landscapes of slice 1 and slice 2 generated by CARD.

Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Deposited data scRNA-seq data of mouse brain cortex Zeisel et al.39 GEO: GSE60361 10x Visium data of mouse brain cortex (free frozen) 10x Genomics https://www.10xgenomics.com/resources/ datasets/mouse-brain-section-coronal-1standard-1-0-0 10x Visium data of mouse brain cortex (FFPE) 10x Genomics https://www.10xgenomics.com/resources/ datasets/adult-mouse-brain-ffpe-1standard-1-3-0 scRNA-seq data of mouse kidney Wu et al.47 GEO: GSE119531 SRT data of mouse kidney (FFPE) 10x Genomics https://www.10xgenomics.com/resources/ datasets/adult-mouse-kidney-ffpe-1standard-1-3-0 ST and paired scRNA-seq data of PDAC Moncada et al.30 GEO: GSE111672 MERFISH data of mouse brain cortex Zhuang et al.68 https://cellxgene.cziscience.com/ collections/31937775-06024e52-a799b6acdd2bac2e Stereo-seq data of mouse brain cortex STOmicsDB70 https://db.cngb.org/stomics/datasets/ STDS0000234 10x Visium data of human breast cancer Wu et al.58 GEO: GSE176078 Software and algorithms R (v4.1.3) R Core Team https://www.r-project.org/ Python (v3.9.7) Python Software Foundation https://www.python.org/ CARD (v1.0) Ma et al.31 https://github.com/YMa-lab/CARD Seurat (v4.3.0) Butler et al.24 https://satijalab.org/seurat Giotto (v1.1.0) Dries et al.25 https://github.com/RubD/Giotto/ Squidpy (v1.2.2) Palla et al.26 https://squidpy.readthedocs.io/en/stable/ Scanpy (v1.9.1) Wolf et al.27 https://scanpy.readthedocs.io/en/stable/ Cell2Location (v0.1) Kleshchevnikov et al.16 https://github.com/BayraktarLab/ cell2location Stlearn (v0.4.6) Pham et al.14 https://github.com/ BiomedicalMachineLearning/stLearn SpaGCN (v1.2.2) Hu et al.12 https://github.com/jianhuupenn/SpaGCN BayesSpace (v1.4.1) Zhao et al.11 https://github.com/edward130603/ BayesSpace SEDR (v1.0.0) Fu et al.13 https://github.com/JinmiaoChenLab/SEDR MENDER (v1.1) Yuan25 https://github.com/yuanzhiyuan/MENDER BASS (v1.1.0.016) Li and Zhou24 https://github.com/zhengli09/BASS SPOTlight (v0.99.8) Elosua-Bayes et al.19 https://github.com/MarcElosua/SPOTlight StereoScope (v0.3) Andersson et al.18 https://github.com/almaan/stereoscope RCTD (v2.0.0) Cable et al.17 https://github.com/dmcable/spacexr SPROD (v1.0) Wang et al.34 https://github.com/yunguan-wang/SPROD SPCS (inline) Liu et al.36 https://github.com/Usos/SPCS SpotClean (v0.99.2) Ni et al.33 https://github.com/zijianni/SpotClean SCDD (v1.0.0) Liu et al.35 https://github.com/lyotvincent/SCDD Matplotlib (v3.5.1) Matplotlib development team https://matplotlib.org De-spot (v1.0.0) This paper https://zenodo.org/doi/10.5281/zenodo.

Techniques: Generated

Figure 3. De-spot detected co-localized cell-type-specific domains using multiple profiles (A) FFPE tissue of the mouse kidney. The slice is histologically annotated to the renal cortex, renal medulla 1, renal medulla 2, and pelvis. (B) Previously published mouse kidney profiles generated by scRNA-seq and small nuclear RNA sequencing, containing 13 cell types annotated by Wu et al.47 CD-PC, collecting duct principal cells; CNT, connecting tubule; DCT, distal convoluted tubules; EC, endothelial cells; IC, intercalated cells; LHAL, the loop of Henle ascending loop; LHDL, the loop of Henle descending loop; MC, mesangial cells; MØ, macrophages; PT, proximal tubules; Pod, po- docytes.

Journal: Cell reports methods

Article Title: Precise detection of cell-type-specific domains in spatial transcriptomics.

doi: 10.1016/j.crmeth.2024.100841

Figure Lengend Snippet: Figure 3. De-spot detected co-localized cell-type-specific domains using multiple profiles (A) FFPE tissue of the mouse kidney. The slice is histologically annotated to the renal cortex, renal medulla 1, renal medulla 2, and pelvis. (B) Previously published mouse kidney profiles generated by scRNA-seq and small nuclear RNA sequencing, containing 13 cell types annotated by Wu et al.47 CD-PC, collecting duct principal cells; CNT, connecting tubule; DCT, distal convoluted tubules; EC, endothelial cells; IC, intercalated cells; LHAL, the loop of Henle ascending loop; LHDL, the loop of Henle descending loop; MC, mesangial cells; MØ, macrophages; PT, proximal tubules; Pod, po- docytes.

Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Deposited data scRNA-seq data of mouse brain cortex Zeisel et al.39 GEO: GSE60361 10x Visium data of mouse brain cortex (free frozen) 10x Genomics https://www.10xgenomics.com/resources/ datasets/mouse-brain-section-coronal-1standard-1-0-0 10x Visium data of mouse brain cortex (FFPE) 10x Genomics https://www.10xgenomics.com/resources/ datasets/adult-mouse-brain-ffpe-1standard-1-3-0 scRNA-seq data of mouse kidney Wu et al.47 GEO: GSE119531 SRT data of mouse kidney (FFPE) 10x Genomics https://www.10xgenomics.com/resources/ datasets/adult-mouse-kidney-ffpe-1standard-1-3-0 ST and paired scRNA-seq data of PDAC Moncada et al.30 GEO: GSE111672 MERFISH data of mouse brain cortex Zhuang et al.68 https://cellxgene.cziscience.com/ collections/31937775-06024e52-a799b6acdd2bac2e Stereo-seq data of mouse brain cortex STOmicsDB70 https://db.cngb.org/stomics/datasets/ STDS0000234 10x Visium data of human breast cancer Wu et al.58 GEO: GSE176078 Software and algorithms R (v4.1.3) R Core Team https://www.r-project.org/ Python (v3.9.7) Python Software Foundation https://www.python.org/ CARD (v1.0) Ma et al.31 https://github.com/YMa-lab/CARD Seurat (v4.3.0) Butler et al.24 https://satijalab.org/seurat Giotto (v1.1.0) Dries et al.25 https://github.com/RubD/Giotto/ Squidpy (v1.2.2) Palla et al.26 https://squidpy.readthedocs.io/en/stable/ Scanpy (v1.9.1) Wolf et al.27 https://scanpy.readthedocs.io/en/stable/ Cell2Location (v0.1) Kleshchevnikov et al.16 https://github.com/BayraktarLab/ cell2location Stlearn (v0.4.6) Pham et al.14 https://github.com/ BiomedicalMachineLearning/stLearn SpaGCN (v1.2.2) Hu et al.12 https://github.com/jianhuupenn/SpaGCN BayesSpace (v1.4.1) Zhao et al.11 https://github.com/edward130603/ BayesSpace SEDR (v1.0.0) Fu et al.13 https://github.com/JinmiaoChenLab/SEDR MENDER (v1.1) Yuan25 https://github.com/yuanzhiyuan/MENDER BASS (v1.1.0.016) Li and Zhou24 https://github.com/zhengli09/BASS SPOTlight (v0.99.8) Elosua-Bayes et al.19 https://github.com/MarcElosua/SPOTlight StereoScope (v0.3) Andersson et al.18 https://github.com/almaan/stereoscope RCTD (v2.0.0) Cable et al.17 https://github.com/dmcable/spacexr SPROD (v1.0) Wang et al.34 https://github.com/yunguan-wang/SPROD SPCS (inline) Liu et al.36 https://github.com/Usos/SPCS SpotClean (v0.99.2) Ni et al.33 https://github.com/zijianni/SpotClean SCDD (v1.0.0) Liu et al.35 https://github.com/lyotvincent/SCDD Matplotlib (v3.5.1) Matplotlib development team https://matplotlib.org De-spot (v1.0.0) This paper https://zenodo.org/doi/10.5281/zenodo.

Techniques: Generated, RNA Sequencing

(A) Electron micrographs of recombinant tau(287–391), α-synuclein, and Aβ 42 fibrils used as heterologous amyloid controls. (B) TAF15 biosensor FRET readout shows no induction by heterologous amyloids (tau, α-synuclein, Aβ 42 ) relative to TAF15 seeds, confirming molecular specificity. Statistics: Two-way ANOVA with t-tests for multiple comparison (n=4 individual replicates). Dotted line indicates control averages (untreated cells). (C-D) aFTLD-U brain lysates (n=4 individual replicates) seed the TAF15 biosensor in a concentration-dependent manner, demonstrating prion-like propagation of ex vivo TAF15 aggregates. Dotted line indicates control averages (untreated cells). (E) TEM validation of recombinant FUS fibrils displaying canonical amyloid morphology. (F) FRET quantification in the TAF15 biosensor demonstrating absence of cross-seeding by FUS aggregates (n=4 individual replicates). (G) Confocal micrographs of biosensor cells co-expressing mRuby-tagged FUS and seeded with TAF15 aggregates, showing co-localization of FUS within TAF15 inclusions.

Journal: bioRxiv

Article Title: TAF15 amyloids propagate via defined motifs in a prion-like fashion

doi: 10.1101/2025.11.17.688886

Figure Lengend Snippet: (A) Electron micrographs of recombinant tau(287–391), α-synuclein, and Aβ 42 fibrils used as heterologous amyloid controls. (B) TAF15 biosensor FRET readout shows no induction by heterologous amyloids (tau, α-synuclein, Aβ 42 ) relative to TAF15 seeds, confirming molecular specificity. Statistics: Two-way ANOVA with t-tests for multiple comparison (n=4 individual replicates). Dotted line indicates control averages (untreated cells). (C-D) aFTLD-U brain lysates (n=4 individual replicates) seed the TAF15 biosensor in a concentration-dependent manner, demonstrating prion-like propagation of ex vivo TAF15 aggregates. Dotted line indicates control averages (untreated cells). (E) TEM validation of recombinant FUS fibrils displaying canonical amyloid morphology. (F) FRET quantification in the TAF15 biosensor demonstrating absence of cross-seeding by FUS aggregates (n=4 individual replicates). (G) Confocal micrographs of biosensor cells co-expressing mRuby-tagged FUS and seeded with TAF15 aggregates, showing co-localization of FUS within TAF15 inclusions.

Article Snippet: All individuals selected for this study exhibited neuronal cytoplasmic inclusions and occasional vermiform neuronal intranuclear inclusions in the dentate gyrus and frontal cortex that were immunoreactive for FUS (11570-1-AP, 1:500, rabbit polyclonal, Proteintech Group) and TAF15 (A300-308A, 1:500, rabbit polyclonal, Bethyl Laboratories).

Techniques: Recombinant, Comparison, Control, Concentration Assay, Ex Vivo, Biomarker Discovery, Expressing

Journal: STAR Protocols

Article Title: A protocol to extract cell-type-specific signatures from differentially expressed genes in bulk-tissue RNA-seq

doi: 10.1016/j.xpro.2022.101121

Figure Lengend Snippet:

Article Snippet: scRNA-seq data - Mouse Whole Cortex and Hippocampus SMART-seq (2019) with 10x-SMART-seq taxonomy (2020) , ; Allen Institute for Brain Science , https://portal.brain-map.org/atlases-and-data/rnaseq/mouse-whole-cortex-and-hippocampus-smart-seq.

Techniques: Gene Expression, Software